A tool to reconstruct plasmids in bacterial assemblies
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
A bacterial genome assembly in FASTA format
*.{fasta,fa,fna}
versions
File containing software versions
versions.yml
chromosome
FASTA file of all contigs found to belong to the chromosome
chromosome.fasta
contig_report
Assignment of the contig to chromosome or a particular plasmid grouping
contig_report.txt
plasmids
Each plasmid group is written to an individual FASTA
plasmid_*.fasta
mobtyper_results
Aggregate MOB-typer report files for all identified plasmid
mobtyper_results.txt
Software tools for clustering, reconstruction and typing of plasmids from draft assemblies.
