Description

Contrast-limited adjusted histogram equalization (CLAHE) on single-channel tif images.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1']

image:file

Single-channel tiff file to be corrected.

*.{tif,tiff}

Output

name:type
description
pattern

img_clahe

meta:map

Groovy Map containing sample information e.g. [ id:'sample1']

*.tiff:file

CLAHE corrected tiff file.

*.{tiff}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

molkartgarage
MIT

One-stop-shop for scripts and tools for processing data for molkart and spatial omics pipelines.

github.com/SchapiroLabor/molkart-local/tree/main https://github.com/SchapiroLabor/molkart-local/blob/main/scripts/molkart_clahe.py
maintainer
Github user kbestak
get in touch
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