modules/molkartgarage_clahe

Contrast-limited adjusted histogram equalization (CLAHE) on single-channel tif images.

claheimage_processingimagingcorrection

https://github.com/nf-core/modules/[...]/modules/nf-core/molkartgarage/clahe

Description

Contrast-limited adjusted histogram equalization (CLAHE) on single-channel tif images.

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1']

`image{:bash}`
`:file`

Single-channel tiff file to be corrected.

*.{tif,tiff}

Output

name:type

description

pattern

`img_clahe{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1']

`*.tiff{:bash}`
`:file`

CLAHE corrected tiff file.

*.{tiff}

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

molkartgarage
MIT

One-stop-shop for scripts and tools for processing data for molkart and spatial omics pipelines.

github.com/SchapiroLabor/molkart-local/tree/main https://github.com/SchapiroLabor/molkart-local/blob/main/scripts/molkart_clahe.py

modules/molkartgarage_clahe

Description

Input

`meta{:bash}`
`:map`

`image{:bash}`
`:file`

Output

`img_clahe{:bash}`

`meta{:bash}`
`:map`

`*.tiff{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

molkartgarage
MIT

maintainer

get in touch

modules/molkartgarage_clahe

Description

Input

meta{:bash}:map

image{:bash}:file

Output

img_clahe{:bash}

meta{:bash}:map

*.tiff{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

molkartgarage MIT

maintainer

get in touch

`meta{:bash}`
`:map`

`image{:bash}`
`:file`

`img_clahe{:bash}`

`meta{:bash}`
`:map`

`*.tiff{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

molkartgarage
MIT