Description

Contrast-limited adjusted histogram equalization (CLAHE) on single-channel tif images.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1']

image (file)

Single-channel tiff file to be corrected.

*.{tif,tiff}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1']

versions (file)

File containing software versions

versions.yml

img_clahe (file)

CLAHE corrected tiff file.

*.{tiff}
maintainer
Github user kbestak
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

molkartgarage
MIT

One-stop-shop for scripts and tools for processing data for molkart and spatial omics pipelines.

github.com/SchapiroLabor/molkart-local/tree/main https://github.com/SchapiroLabor/molkart-local/blob/main/scripts/molkart_clahe.py