Scan a reference genome to get microsatellite & homopolymer information
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta:file
FASTA file
*.{fa,fasta}
txt
*.tab:file
MSIsensor scan output file of homopolymers & minisatellites
*.msisensor_scan.txt
versions
versions.yml:file
File containing software versions
versions.yml
MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline.
