Scan a reference genome to get microsatellite & homopolymer information
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
FASTA file
*.{fa,fasta}
versions
File containing software versions
versions.yml
txt
MSIsensor scan output file of homopolymers & minisatellites
*.msisensor_scan.txt
MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline.
