Scan a reference genome to get microsatellite & homopolymer information
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
FASTA file
*.{fa,fasta}
txt{:bash}
*.tab{:bash}
MSIsensor scan output file of homopolymers & minisatellites
*.msisensor_scan.txt
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline.
