Scan a reference genome to get microsatellite & homopolymer information
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
FASTA file
*.{fa,fasta}
txt
*.tab
MSIsensor scan output file of homopolymers & minisatellites
*.msisensor_scan.txt
versions
versions.yml
File containing software versions
MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline.
