modules/msisensorpro_scan

MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input

micro-satellite-scanmsisensor-proscan

https://github.com/nf-core/modules/[...]/modules/nf-core/msisensorpro/scan

Description

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`fasta:file`

Reference genome

*.{fasta}

Output

name:type

description

pattern

`list`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.list:file`

File containing microsatellite list

*.{list}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

msisensorpro
Custom Licence

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

github.com/xjtu-omics/msisensor-pro github.com/xjtu-omics/msisensor-pro/wiki https://github.com/xjtu-omics/msisensor-pro 10.1016/j.gpb.2020.02.001

modules/msisensorpro_scan

Description

Input

`meta:map`

`fasta:file`

Output

`list`

`meta:map`

`*.list:file`

`versions`

`versions.yml:file`

Tools

msisensorpro
Custom Licence

included in

maintainer

get in touch

modules/msisensorpro_scan

Description

Input

meta:map

fasta:file

Output

list

meta:map

*.list:file

versions

versions.yml:file

Tools

msisensorpro Custom Licence

included in

maintainer

get in touch

`meta:map`

`fasta:file`

`list`

`meta:map`

`*.list:file`

`versions`

`versions.yml:file`

msisensorpro
Custom Licence