Groovy Map containing sample information
e.g. [ id:'test']
pdbs (file)
Input protein structures in PDB format. Files may be gzipped or uncompressed. They should contain exactly one chain!
*.{pdb}
compress (boolean)
Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded.
Output
Name (Type)
Description
Pattern
meta (map)
Groovy Map containing sample information
e.g. [ id:'test']
alignment (file)
Alignment in FASTA format. May be gzipped or uncompressed.
*.aln{.gz,}
structure (file)
Overlaid structures in PDB format. May be gzipped or uncompressed.
