Convert genomic BAM/SAM files to transcriptomic BAM/RAD files.
meta
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
bam
:file
Name-Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
index
:directory
Annotation index created by mudskipper/index
gtf
Annotation file
*.{gtf,gff,gff3}
rad
:string
File type
${prefix}.bam
Sorted BAM file
*.bam
${prefix}.rad
RAD file
*.rad
versions
versions.yml
File containing software versions
mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files.
