Convert genomic BAM/SAM files to transcriptomic BAM/RAD files.
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
bam
Name-Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
gtf
Annotation file
*.{gtf,gff,gff3}
index
Annotation index created by mudskipper/index
versions
File containing software versions
versions.yml
Sorted BAM file
*.bam
rad
RAD file
*.rad
mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files.
