Description

Build and store a gtf index, which is useful for converting genomic BAM/SAM files to transcriptomic BAM/SAM files.

Input

Name (Type)
Description
Pattern

gtf (file)

Transcript annotation file.

*.{gtf,gff,gff3}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

index (directory)

Mudskipper index for running mudskipper conversion tools

*/
mantainer
Github user anoronh4
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Tools

mudskipper
BSD 3-clause

mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files.

github.com/OceanGenomics/mudskipper