Description

Build and store a gtf index, which is useful for converting genomic BAM/SAM files to transcriptomic BAM/SAM files.

Input

name:type
description
pattern

gtf:file

Transcript annotation file.

*.{gtf,gff,gff3}

Output

name:type
description
pattern

index

index/:directory

Mudskipper index for running mudskipper conversion tools

*/

versions

versions.yml:file

File containing software versions

versions.yml

Tools

mudskipper
BSD 3-clause

mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files.

github.com/OceanGenomics/mudskipper
maintainer
Github user anoronh4
get in touch
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