MUMmer is a system for rapidly aligning entire genomes
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
ref
FASTA file of the reference sequence
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
query
FASTA file of the query sequence
versions
File containing software versions
versions.yml
coords
File containing coordinates of matches between reference and query sequence
*.coords
