MUMmer is a system for rapidly aligning entire genomes
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
ref{:bash}
:file
FASTA file of the reference sequence
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
query{:bash}
FASTA file of the query sequence
coords{:bash}
*.coords{:bash}
File containing coordinates of matches between reference and query sequence
*.coords
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
