Description

Muscle is a program for creating multiple alignments of amino acid or nucleotide sequences. This particular module uses the super5 algorithm for very big alignments. It can permutate the guide tree according to a set of flags.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Input sequences for alignment must be in FASTA format

*.{fasta,fa,fna}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

alignment (file)

Multiple sequence alignment produced in FASTA format

*.{aln}
included in
multiplesequencealign
mantainers
Github user alessiovignoli Github user JoseEspinosa
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Tools

muscle -super5
Public Domain

Muscle v5 is a major re-write of MUSCLE based on new algorithms.

drive5.com/muscle5 drive5.com/muscle5/manual10.1101/2021.06.20.449169