Groovy Map containing sample information
e.g. [ id:'sample1' ]
gene_list (file)
A tsv/csv file that contains a list of gene ids in one of the columns. By default, the column name should be “gene_id”, but this can be changed by using “—columname gene_id” in ext.args.
*.{csv,tsv}
Output
Name (Type)
Description
Pattern
meta (map)
Groovy Map containing sample information
e.g. [ id:'sample1' ]
gmt (file)
Each row contains the GO id, a description, and a list of gene ids.
*.gmt
tsv (file)
(optional) A tsv file with the following columns:
query, mygene_id, go_id, go_term, go_evidence, go_category, symbol, name, taxid
