Groovy Map containing sample information
e.g. [ id:'sample1' ]
gene_list
:file
A tsv/csv file that contains a list of gene ids in one of the columns. By default, the column name should be “gene_id”, but this can be changed by using “—columname gene_id” in ext.args.
*.{csv,tsv}
Output
name:type
description
pattern
gmt
meta
:map
Groovy Map containing sample information
e.g. [ id:'sample1' ]
*.gmt
:file
Each row contains the GO id, a description, and a list of gene ids.
*.gmt
tsv
meta
:map
Groovy Map containing sample information
e.g. [ id:'sample1' ]
*.tsv
:file
(optional) A tsv file with the following columns:
query, mygene_id, go_id, go_term, go_evidence, go_category, symbol, name, taxid
*.tsv
versions_mygene
${task.process}
:string
The name of the process
mygene
:string
The name of the tool
3.2.2
:string
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
mygene
:string
The name of the tool
3.2.2
:string
The expression to obtain the version of the tool
Tools
mygene
Apache-2.0
A python wrapper to query/retrieve gene annotation data from Mygene.info.
