AMR predictions for supported species
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
seqs{:bash}
:file
BAM or FASTQ file
*.{bam,fastq.gz,fq.gz}
species{:bash}
:string
Species to make AMR prediction against
*
csv{:bash}
${prefix}.csv{:bash}
AMR predictions in CSV format
*.csv
json{:bash}
${prefix}.json{:bash}
AMR predictions in JSON format
*.json
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Antibiotic resistance prediction in minutes
