AMR predictions for supported species
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
seqs:file
BAM or FASTQ file
*.{bam,fastq.gz,fq.gz}
species:string
Species to make AMR prediction against
*
csv
${prefix}.csv:file
AMR predictions in CSV format
*.csv
json
${prefix}.json:file
AMR predictions in JSON format
*.json
versions
versions.yml:file
File containing software versions
versions.yml
Antibiotic resistance prediction in minutes
