AMR predictions for supported species
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
seqs
BAM or FASTQ file
*.{bam,fastq.gz,fq.gz}
species
Species to make AMR prediction against
*
versions
File containing software versions
versions.yml
csv
AMR predictions in CSV format
*.csv
json
AMR predictions in JSON format
*.json
Antibiotic resistance prediction in minutes
