Filtering and trimming of Oxford Nanopore Sequencing data
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads
:file
Gunziped fastq files from Oxford Nanopore sequencing.
*.fastq.gz
summary_file
Optional - Albacore or guppy summary file for quality scores
filtreads
Gunziped fastq files after filtering.
log_file
*.log
Log file generated by –logfile option in NanoFilt, the file must end with .log extension.
versions_nanofilt
${task.process}
:string
The name of the process
nanofilt
The name of the tool
NanoFilt -v | sed "s/NanoFilt //"
:eval
The expression to obtain the version of the tool
versions
