Filtering and trimming of Oxford Nanopore Sequencing data
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads:file
Gunziped fastq files from Oxford Nanopore sequencing.
*.fastq.gz
summary_file:file
Optional - Albacore or guppy summary file for quality scores
filtreads
*.fastq.gz:file
Gunziped fastq files after filtering.
log_file
*.log:file
Log file generated by —logfile option in NanoFilt, the file must end with .log extension.
*.log
versions
versions.yml:file
File containing software versions
versions.yml
