Filtering and trimming of Oxford Nanopore Sequencing data
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads{:bash}
:file
Gunziped fastq files from Oxford Nanopore sequencing.
*.fastq.gz
summary_file{:bash}
Optional - Albacore or guppy summary file for quality scores
filtreads{:bash}
*.fastq.gz{:bash}
Gunziped fastq files after filtering.
log_file{:bash}
*.log{:bash}
Log file generated by —logfile option in NanoFilt, the file must end with .log extension.
*.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
