Description

Filtering and trimming of Oxford Nanopore Sequencing data

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

reads:file

Gunziped fastq files from Oxford Nanopore sequencing.

*.fastq.gz

summary_file:file

Optional - Albacore or guppy summary file for quality scores

Output

name:type
description
pattern

filtreads

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.fastq.gz:file

Gunziped fastq files after filtering.

*.fastq.gz

log_file

*.log:file

Log file generated by —logfile option in NanoFilt, the file must end with .log extension.

*.log

versions

versions.yml:file

File containing software versions

versions.yml

Tools

nanofilt
GLP-3.0

Filtering and trimming of Oxford Nanopore Sequencing data