Description

DNA contaminant removal using NanoLyse

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastq (file)

Basecalled reads in FASTQ.GZ format

*.fastq.gz

fasta (file)

A reference fasta file against which to filter.

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastq (file)

Reads with contaminants removed in FASTQ format

*.fastq.gz

log (file)

Log of the Nanolyse run.

*.log

versions (file)

File containing software versions

versions.yml

Tools

nanolyse
GPL-3.0-or-later

DNA contaminant removal using NanoLyse