modules/nanoplot

Run NanoPlot on nanopore-sequenced reads

quality controlqcfastqsequencing summarynanopore

https://github.com/nf-core/modules/[...]/modules/nf-core/nanoplot

Description

Run NanoPlot on nanopore-sequenced reads

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`ontfile:file`

ONT file

Output

name:type

description

pattern

`html`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.html:file`

NanoPlot report

*{.html}

`png`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.png:file`

Plots generated by NanoPlot

*{.png}

`txt`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.txt:file`

Stats from NanoPlot

*{.txt}

`log`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.log:file`

log file of NanoPlot run

*{.log}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

nanoplot
GPL-3.0-or-later

NanoPlot is a tool for plotting long-read sequencing data and alignment.

http://nanoplot.bioinf.be github.com/wdecoster/NanoPlot

modules/nanoplot

Description

Input

meta:map

ontfile:file

Output

html

meta:map

*.html:file

png

meta:map

*.png:file

txt

meta:map

*.txt:file

log

meta:map

*.log:file

versions

versions.yml:file

Tools

nanoplot GPL-3.0-or-later

`meta:map`

`ontfile:file`

`html`

`meta:map`

`*.html:file`

`png`

`meta:map`

`*.png:file`

`txt`

`meta:map`

`*.txt:file`

`log`

`meta:map`

`*.log:file`

`versions`

`versions.yml:file`

nanoplot
GPL-3.0-or-later