Description

Run NanoPlot on nanopore-sequenced reads

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

ontfile:file

ONT file

Output

name:type
description
pattern

html

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.html:file

NanoPlot report

*{.html}

png

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.png:file

Plots generated by NanoPlot

*{.png}

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.txt:file

Stats from NanoPlot

*{.txt}

log

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.log:file

log file of NanoPlot run

*{.log}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

nanoplot
GPL-3.0-or-later

NanoPlot is a tool for ploting long-read sequencing data and alignment.