Description

Run NanoPlot on nanopore-sequenced reads

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastq (file)

List of input basecalled-FastQ files.

summary_txt (file)

List of sequencing_summary.txt files from running basecalling.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

html (file)

NanoPlot report

*{.html}

png (file)

Plots generated by NanoPlot

*{.png}

txt (file)

Stats from NanoPlot

*{.txt}

log (file)

log file of NanoPlot run

*{.log}

versions (file)

File containing software versions

versions.yml

Tools

nanoplot
GPL-3.0-or-later

NanoPlot is a tool for ploting long-read sequencing data and alignment.