Performs fastq alignment to a reference using NARFMAP
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
meta2
Groovy Map containing reference information e.g. [ id:‘test’, single_end
hashmap
NARFMAP hash table
Directory containing NARFMAP hash table *.{cmp,.bin,.txt}
bam
Output BAM file containing read alignments
*.{bam}
versions
File containing software versions
versions.yml
narfmap is a fork of the Dragen mapper/aligner Open Source Software.
