modules/narfmap_hashtable

Create DRAGEN hashtable for reference genome

indexfastagenomereference

https://github.com/nf-core/modules/[...]/modules/nf-core/narfmap/hashtable

Description

Create DRAGEN hashtable for reference genome

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing reference information e.g. [ id:‘test’, single_end:false ]

`fasta`
`:file`

Input genome fasta file

Output

name:type

description

pattern

`hashmap`

`meta`
`:map`

Groovy Map containing reference information e.g. [ id:‘test’, single_end:false ]

`narfmap`
`:file`

NARFMAP hash table

*.{cmp,.bin,.txt}

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

narfmap
GPL v3

narfmap is a fork of the Dragen mapper/aligner Open Source Software.

github.com/edmundmiller/narfmap github.com/edmundmiller/NARFMAP/blob/main/doc/usage.md#basic-command-line-usage https://github.com/edmundmiller/narfmap

modules/narfmap_hashtable

Description

Input

`meta`
`:map`

`fasta`
`:file`

Output

`hashmap`

`meta`
`:map`

`narfmap`
`:file`

`versions`

`versions.yml`
`:file`

Tools

narfmap
GPL v3

maintainer

get in touch

modules/narfmap_hashtable

Description

Input

meta:map

fasta:file

Output

hashmap

meta:map

narfmap:file

versions

versions.yml:file

Tools

narfmap GPL v3

maintainer

get in touch

`meta`
`:map`

`fasta`
`:file`

`hashmap`

`meta`
`:map`

`narfmap`
`:file`

`versions`

`versions.yml`
`:file`

narfmap
GPL v3