Description

Get dataset for SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks (C++ implementation)

Input

Name (Type)
Description
Pattern

dataset (string)

Name of dataset to retrieve. A list of available datasets can be obtained using the nextclade dataset list command.

.+

tag (string)

Version tag of the dataset to download. A list of available datasets can be obtained using the nextclade dataset list command.

.+

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

prefix (directory)

A directory containing the dataset files needed for nextclade run

prefix
included in
viralrecon
maintainers
Github user antunderwood
Github user drpatelh
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Tools

nextclade
MIT

SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks

github.com/nextstrain/nextclade