Description

Get dataset for SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks (C++ implementation)

Input

name:type
description
pattern

dataset:string

Name of dataset to retrieve. A list of available datasets can be obtained using the nextclade dataset list command.

.+

tag:string

Version tag of the dataset to download. A list of available datasets can be obtained using the nextclade dataset list command.

.+

Output

name:type
description
pattern

dataset

$prefix:directory

Directory containing the dataset

versions

versions.yml:file

File containing software versions

versions.yml

Tools

nextclade
MIT

SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks