Description

Get dataset for SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks (C++ implementation)

Input

name:type
description
pattern

dataset{:bash}

:string

Name of dataset to retrieve. A list of available datasets can be obtained using the nextclade dataset list command.

.+

tag{:bash}

:string

Version tag of the dataset to download. A list of available datasets can be obtained using the nextclade dataset list command.

.+

Output

name:type
description
pattern

dataset{:bash}

$prefix{:bash}

:directory

Directory containing the dataset

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

nextclade
MIT

SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks

github.com/nextstrain/nextclade
included in
viralrecon
maintainers
Github user antunderwood
Github user drpatelh
get in touch
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