Merging paired-end reads and removing sequencing adapters.
meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
reads:file
List of input FastQ files of size 2; i.e., paired-end data.
*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}
merged_reads
*.merged.fq.gz:file
fastq file merged reads
unstitched_read1
*_1.fastq.gz:file
fastq file unstitched read 1
unstitched_read2
*_2.fastq.gz:file
fastq file unstitched read 2
versions
versions.yml:file
File containing software versions
versions.yml
