Merging paired-end reads and removing sequencing adapters.
meta
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
reads
:file
List of input FastQ files of size 2; i.e., paired-end data.
*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}
merged_reads
*.merged.fq.gz
fastq file merged reads
unstitched_read1
*_1.fastq.gz
fastq file unstitched read 1
unstitched_read2
*_2.fastq.gz
fastq file unstitched read 2
versions_ngmerge
${task.process}
:string
The name of the process
ngmerge
The name of the tool
NGmerge --version 2>&1 | sed -n '1s/^NGmerge, version //p'
:eval
The expression to obtain the version of the tool
versions
