Description

Merging paired-end reads and removing sequencing adapters.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

reads (file)

List of input FastQ files of size 2; i.e., paired-end data.

*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

merged_reads (file)

fastq file merged reads

*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}

unstitched_read1 (file)

fastq file unstitched read 1

*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}

unstitched_read2 (file)

fastq file unstitched read 2

*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}

Tools

ngmerge
MIT

Merging paired-end reads and removing sequencing adapters.