Merging paired-end reads and removing sequencing adapters.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 2; i.e., paired-end data.
*.{fa,fasta,fastq,fq,fa.gz,fasta.gz,fastq.gz,fq.gz}
merged_reads{:bash}
*.merged.fq.gz{:bash}
fastq file merged reads
unstitched_read1{:bash}
*_1.fastq.gz{:bash}
fastq file unstitched read 1
unstitched_read2{:bash}
*_2.fastq.gz{:bash}
fastq file unstitched read 2
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
