modules/ngscheckmate_vafncm
Determining whether sequencing data comes from the same individual by using SNP matching. This module generates PT files from a bed file containing individual positions.
ngscheckmatematchingsnpqc
Description
Determining whether sequencing data comes from the same individual by using SNP matching. This module generates PT files from a bed file containing individual positions.
Input
Name (Type)
Description
Pattern
Groovy Map containing sample information about the combined set of files
e.g. [ id:'combined' ]
Output
Name (Type)
Description
Pattern
Groovy Map containing sample information about the combined set of files
e.g. [ id:'combined' ]
A pdf containing a dendrogram showing how the samples match up. | Note due to a bug in the R script used by the tool this is not produced when only two samples are given.
*.{pdf}