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meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
reads:file
FASTQ or FASTA file (ideally uncompressed, but not required)
*.{fasta,fna,fas,fa,fastq,fq,fasta.gz,fna.gz,fas.gz,fa.gz,fastq.gz,fq.gz}
format:string
File format of input file
fasta|fastq
mode:string
Mode of redundancy estimation
kmer|alignment
versions:file
File containing software versions
versions.yml
npa:file
Raw redundancy values
*.npa
npc:file
Mates distribution file
*.npc
npl:file
Log file
*.npl
npo:file
Redundancy summary file
*.npo
Estimate average coverage and create curves for metagenomic datasets
