Description

write your description here

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

reads:file

FASTQ or FASTA file (ideally uncompressed, but not required)

*.{fasta,fna,fas,fa,fastq,fq,fasta.gz,fna.gz,fas.gz,fa.gz,fastq.gz,fq.gz}

format:string

File format of input file

fasta|fastq

mode:string

Mode of redundancy estimation

kmer|alignment

Output

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

versions:file

File containing software versions

versions.yml

npa:file

Raw redundancy values

*.npa

npc:file

Mates distribution file

*.npc

npl:file

Log file

*.npl

npo:file

Redundancy summary file

*.npo

Tools

nonpareil
Artistic License 2.0

Estimate average coverage and create curves for metagenomic datasets