modules/nonpareil_curve

Visualise metagenome redundancy curve in PNG format from a single Nonpareil npo file

metagenomicsstatisticscoveragecomplexityredundancydiversityvisualisation

https://github.com/nf-core/modules/[...]/modules/nf-core/nonpareil/curve

Description

Visualise metagenome redundancy curve in PNG format from a single Nonpareil npo file

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`npo{:bash}`
`:file`

Single npo redundancy summary file from nonpareil itself

*.npo

Output

name:type

description

pattern

`png{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.png{:bash}`
`:file`

PNG file of the Nonpareil curve

*.png

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

nonpareil
Artistic License 2.0

Estimate average coverage and create curves for metagenomic datasets

github.com/lmrodriguezr/nonpareil nonpareil.readthedocs.io/en/latest https://github.com/lmrodriguezr/nonpareil 10.1128/msystems.00039-

modules/nonpareil_curve

Description

Input

`meta{:bash}`
`:map`

`npo{:bash}`
`:file`

Output

`png{:bash}`

`meta{:bash}`
`:map`

`*.png{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

nonpareil
Artistic License 2.0

included in

maintainer

get in touch

modules/nonpareil_curve

Description

Input

meta{:bash}:map

npo{:bash}:file

Output

png{:bash}

meta{:bash}:map

*.png{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

nonpareil Artistic License 2.0

included in

maintainer

get in touch

`meta{:bash}`
`:map`

`npo{:bash}`
`:file`

`png{:bash}`

`meta{:bash}`
`:map`

`*.png{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

nonpareil
Artistic License 2.0