Description

Visualise metagenome redundancy curve in PNG format from a single Nonpareil npo file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

npo:file

Single npo redundancy summary file from nonpareil itself

*.npo

Output

name:type
description
pattern

png

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.png:file

PNG file of the Nonpareil curve

*.png

versions

versions.yml:file

File containing software versions

versions.yml

Tools

nonpareil
Artistic License 2.0

Estimate average coverage and create curves for metagenomic datasets

github.com/lmrodriguezr/nonpareil nonpareil.readthedocs.io/en/latest https://github.com/lmrodriguezr/nonpareil 10.1128/msystems.00039-
taxprofiler
Github user jfy133
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