Calculate metagenome redundancy curve from FASTQ files
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
reads
FASTQ or FASTA file (ideally uncompressed, but not required)
*.{fasta,fna,fas,fa,fastq,fq,fasta.gz,fna.gz,fas.gz,fa.gz,fastq.gz,fq.gz}
format
File format of input file
fasta|fastq
mode
Mode of redundancy estimation
kmer|alignment
versions
File containing software versions
versions.yml
npa
Raw redundancy values
*.npa
npc
Mates distribution file
*.npc
npl
Log file
*.npl
npo
Redundancy summary file
*.npo
Estimate average coverage and create curves for metagenomic datasets
