Calculate metagenome redundancy curve from FASTQ files
meta
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
reads
:file
FASTQ or FASTA file (ideally uncompressed, but not required)
*.{fasta,fna,fas,fa,fastq,fq,fasta.gz,fna.gz,fas.gz,fa.gz,fastq.gz,fq.gz}
format
:string
File format of input file
fasta|fastq
mode
Mode of redundancy estimation
kmer|alignment
npa
*.npa
Raw redundancy values
npc
*.npc
Mates distribution file
npl
*.npl
Log file
npo
*.npo
Redundancy summary file
versions
versions.yml
File containing software versions
Estimate average coverage and create curves for metagenomic datasets
