Calculate metagenome redundancy curve from FASTQ files
meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
reads:file
FASTQ or FASTA file (ideally uncompressed, but not required)
*.{fasta,fna,fas,fa,fastq,fq,fasta.gz,fna.gz,fas.gz,fa.gz,fastq.gz,fq.gz}
format:string
File format of input file
fasta|fastq
mode:string
Mode of redundancy estimation
kmer|alignment
npa
*.npa:file
Raw redundancy values
*.npa
npc
*.npc:file
Mates distribution file
*.npc
npl
*.npl:file
Log file
*.npl
npo
*.npo:file
Redundancy summary file
*.npo
versions
versions.yml:file
File containing software versions
versions.yml
Estimate average coverage and create curves for metagenomic datasets
