Description

Visualise metagenome redundancy curves in PNG format from multiple Nonpareil npo files in a single image

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

npos:file

A list of npo redundancy summary files from nonpareil itself

*.npo

Output

name:type
description
pattern

png

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.png:file

PNG file of all the Nonpareil curves of the input npo files

*.png

versions

versions.yml:file

File containing software versions

versions.yml

Tools

nonpareil
Artistic License 2.0

Estimate average coverage and create curves for metagenomic datasets