Description

Visualise metagenome redundancy curves from multiple Nonpareil npo file in a single image

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

npo (file)

A list of npo redundancy summary files from nonpareil itself

*.npo

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

npa (file)

PNG file of all the Nonpareil curves of the input npo files

*.png

Tools

nonpareil
Artistic License 2.0

Estimate average coverage and create curves for metagenomic datasets