Description

Visualise metagenome redundancy curves in PNG format from multiple Nonpareil npo files in a single image

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

npos

:file

A list of npo redundancy summary files from nonpareil itself

*.npo

Output

name:type
description
pattern

png

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.png

:file

PNG file of all the Nonpareil curves of the input npo files

*.png

versions_nonpareil

${task.process}

:string

Process which generated the version

Nonpareil

:string

Tool name

Rscript -e "library(Nonpareil); cat(paste(unlist(packageVersion('Nonpareil')), collapse = '.'))"

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

Process which generated the version

Nonpareil

:string

Tool name

Rscript -e "library(Nonpareil); cat(paste(unlist(packageVersion('Nonpareil')), collapse = '.'))"

:eval

The expression to obtain the version of the tool

Tools

nonpareil
Artistic License 2.0

Estimate average coverage and create curves for metagenomic datasets

github.com/lmrodriguezr/nonpareil nonpareil.readthedocs.io/en/latest https://github.com/lmrodriguezr/nonpareil 10.1128/msystems.00039-
included in
taxprofiler
maintainer
Github user jfy133
get in touch
Ask a question on Slack Open an issue on GitHub