Description

Visualise metagenome redundancy curves from multiple Nonpareil npo file in a single image

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

npos (file)

A list of npo redundancy summary files from nonpareil itself

*.npo

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

png (file)

PNG file of all the Nonpareil curves of the input npo files

*.png
maintainer
Github user jfy133
get in touch
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Tools

nonpareil
Artistic License 2.0

Estimate average coverage and create curves for metagenomic datasets

github.com/lmrodriguezr/nonpareil nonpareil.readthedocs.io/en/latest https://github.com/lmrodriguezr/nonpareil 10.1128/msystems.00039-