Description

Visualise metagenome redundancy curves in PNG format from multiple Nonpareil npo files in a single image

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

npos{:bash}

:file

A list of npo redundancy summary files from nonpareil itself

*.npo

Output

name:type
description
pattern

png{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.png{:bash}

:file

PNG file of all the Nonpareil curves of the input npo files

*.png

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

nonpareil
Artistic License 2.0

Estimate average coverage and create curves for metagenomic datasets

github.com/lmrodriguezr/nonpareil nonpareil.readthedocs.io/en/latest https://github.com/lmrodriguezr/nonpareil 10.1128/msystems.00039-
included in
taxprofiler
maintainer
Github user jfy133
get in touch
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