NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
ref
:file
FASTA file of the reference sequence
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
query
FASTA file of the query sequence
delta
*.delta
File containing coordinates of matches between reference and query
coords
*.coords
NUCmer1.1 coords output file
*.{coords}
versions_nucmer
${task.process}
:string
The name of the process
nucmer
The name of the tool
nucmer --version 2>&1 | sed -n 's/NUCmer (NUCleotide MUMmer) version //p'
:eval
The expression to obtain the version of the tool
versions
