NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
ref:file
FASTA file of the reference sequence
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
query:file
FASTA file of the query sequence
delta
*.delta:file
File containing coordinates of matches between reference and query
coords
*.coords:file
NUCmer1.1 coords output file
*.{coords}
versions
versions.yml:file
File containing software versions
versions.yml
