Description

NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

ref (file)

FASTA file of the reference sequence

*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}

query (file)

FASTA file of the query sequence

*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

delta (file)

File containing coordinates of matches between reference and query

coords (file)

NUCmer1.1 coords output file

*.{coords}
maintainers
Github user sateeshperi
Github user mjcipriano
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Tools

nucmer
The Artistic License

NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.

http://mummer.sourceforge.net 10.1186/gb-2004-5-2-r12