Description

Construct a dynamic succinct variation graph in ODGI format from a GFAv1.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

graph (file)

Pangenome graph in GFA v1.0 format

*.{gfa}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

og (file)

File containing a pangenome graph in ODGI binary format. Usually ends with ‘.og’

*.{og}