Description

Construct a dynamic succinct variation graph in ODGI format from a GFAv1.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

graph:file

Pangenome graph in GFA v1.0 format

*.{gfa}

Output

name:type
description
pattern

og

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.og:file

File containing a pangenome graph in ODGI binary format. Usually ends with ‘.og’

*.{og}

versions

versions.yml:file

File containing software versions

versions.yml