Description

Apply different kind of sorting algorithms to a graph. The most prominent one is the PG-SGD sorting algorithm.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

graph (file)

Pangenome graph in GFA v1.0 format or in ODGI binary format

*.{gfa,og}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

sorted_graph (file)

1D sorted pangenome graph in ODGI binary format

*.{og}
included in
pangenome
maintainer
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