Description

Apply different kind of sorting algorithms to a graph. The most prominent one is the PG-SGD sorting algorithm.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

graph{:bash}

:file

Pangenome graph in GFA v1.0 format or in ODGI binary format

*.{gfa,og}

Output

name:type
description
pattern

sorted_graph{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.og{:bash}

:file

1D sorted pangenome graph in ODGI binary format

*.{og}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

included in
pangenome
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