Description

Squeezes multiple graphs in ODGI format into the same file in ODGI format.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

graphs

:file

Pangenome graph files in ODGI format.

*.{og}

Output

name:type
description
pattern

graph

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.og

:file

Squeezed pangenome graph in ODGI format.

*.{og}

versions_odgi

${task.process}

:string

The name of the process

odgi

:string

The name of the tool

odgi version | sed 's/^v//; s/-.*//'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

odgi

:string

The name of the tool

odgi version | sed 's/^v//; s/-.*//'

:eval

The expression to obtain the version of the tool