Description

Squeezes multiple graphs in ODGI format into the same file in ODGI format.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

graphs (file)

Pangenome graph files in ODGI format.

*.{og}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

graph (file)

Squeezed pangenome graph in ODGI format.

*.{og}

versions (file)

File containing software versions

versions.yml
included in
pangenome
author
Github user subwaystation
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Tools

odgi
MIT

An optimized dynamic genome/graph implementation

github.com/pangenome/odgi odgi.readthedocs.io/en/latest https://github.com/pangenome/odgi 10.1093/bioinformatics/btac308