Metrics describing a variation graph and its path relationship.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
graph
:file
Pangenome graph in binary ODGI or in GFA v1.0 format
*.{og,gfa}
tsv
*.og.stats.tsv
Optional output file that contains graph statistics in TSV format.
*.{tsv}
yaml
*.og.stats.yaml
Optional output file that contains graph statistics in YAML format.
*.{yaml}
versions_odgi
${task.process}
:string
The name of the process
odgi
The name of the tool
odgi version | sed 's/^v//; s/-.*//'
:eval
The expression to obtain the version of the tool
versions
An optimized dynamic genome/graph implementation
