Description

Metrics describing a variation graph and its path relationship.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

graph:file

Pangenome graph in binary ODGI or in GFA v1.0 format

*.{og,gfa}

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.og.stats.tsv:file

Optional output file that contains graph statistics in TSV format.

*.{tsv}

yaml

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.og.stats.yaml:file

Optional output file that contains graph statistics in YAML format.

*.{yaml}

versions

versions.yml:file

File containing software versions

versions.yml