Description

Metrics describing a variation graph and its path relationship.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

graph (file)

Pangenome graph in binary ODGI or in GFA v1.0 format

*.{og,gfa}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

tsv (file)

Optional output file that contains graph statistics in TSV format.

*.{tsv}

yaml (file)

Optional output file that contains graph statistics in YAML format.

*.{yaml}