Description

Project a graph into other formats.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

graph (file)

Pangenome graph in GFA v1.0 format or in ODGI binary format

*.{gfa,og}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

gfa (file)

File containing a pangenome graph in GFA v1.0 format.

*.{gfa}
included in
pangenome
author
Github user subwaystation
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Tools

odgi
MIT

An optimized dynamic genome/graph implementation

github.com/pangenome/odgi odgi.readthedocs.io/en/latest https://github.com/pangenome/odgi 10.1093/bioinformatics/btac308