Description

Project a graph into other formats.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

graph

:file

Pangenome graph in GFA v1.0 format or in ODGI binary format

*.{gfa,og}

Output

name:type
description
pattern

gfa

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.gfa

:file

File containing a pangenome graph in GFA v1.0 format.

*.{gfa}

versions_odgi

${task.process}

:string

The name of the process

odgi

:string

The name of the tool

odgi version | sed 's/^v//; s/-.*//'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

odgi

:string

The name of the tool

odgi version | sed 's/^v//; s/-.*//'

:eval

The expression to obtain the version of the tool