Description

Create a decoy peptide database from a standard FASTA database.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

fasta{:bash}

:file

Fasta file containing protein sequences

*.{fasta}

Output

name:type
description
pattern

decoy_fasta{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.fasta{:bash}

:file

Fasta file containing proteins and decoy proteins

*.{fasta}

versions_openms{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

openms{:bash}

:string

The tool name

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

openms{:bash}

:string

The tool name

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'{:bash}

:eval

The expression to obtain the version of the tool

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses