Description

Filters peptide/protein identification results by different criteria.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

id_file (file)

Peptide-spectrum matches.

*.{idXML,consensusXML}

filter_file (file)

Optional idXML file to filter on/out peptides or proteins

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

filtered (file)

Filtered peptide-spectrum matches.

*.{idXML,consensusXML}

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses