modules/openms_idripper

Split a merged identification file into their originating identification files

splitidXMLopenmsproteomics

https://github.com/nf-core/modules/[...]/modules/nf-core/openms/idripper

Description

Split a merged identification file into their originating identification files

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`merged_idxml:file`

Merged idXML file

*.{idXML}

Output

name:type

description

pattern

`idxmls`

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`*.idXML:file`

Multiple idXML files

*.{idXML}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses

openms.de openms.readthedocs.io/en/latest https://github.com/OpenMS/OpenMS 10.1038/s41592-024-02197-7

modules/openms_idripper

Description

Input

`meta:map`

`merged_idxml:file`

Output

`idxmls`

`meta:map`

`*.idXML:file`

`versions`

`versions.yml:file`

Tools

openms
BSD

included in

maintainer

get in touch

modules/openms_idripper

Description

Input

meta:map

merged_idxml:file

Output

idxmls

meta:map

*.idXML:file

versions

versions.yml:file

Tools

openms BSD

included in

maintainer

get in touch

`meta:map`

`merged_idxml:file`

`idxmls`

`meta:map`

`*.idXML:file`

`versions`

`versions.yml:file`

openms
BSD