Description

Switches between different scores of peptide or protein hits in identification data

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

idxml{:bash}

:file

Identification file containing a primary PSM score

*.{idXML}

Output

name:type
description
pattern

idxml{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.idXML{:bash}

:file

Identification file containing a new primary PSM score obtained from a specified meta value

*.{idXML}

versions_openms{:bash}

${task.process}{:bash}

:string

The name of the process

openms{:bash}

:string

The name of the tool

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

openms{:bash}

:string

The name of the tool

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'{:bash}

:eval

The expression to obtain the version of the tool

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses

openms.de openms.readthedocs.io/en/latest https://github.com/OpenMS/OpenMS 10.1038/s41592-024-02197-7
included in
mhcquant
maintainer
Github user jonasscheid
get in touch
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