Description

A tool for peak detection in high-resolution profile data (Orbitrap or FTICR)

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

mzml

:file

Mass spectrometer output file in mzML format

*.{mzML}

Output

name:type
description
pattern

mzml

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.mzML

:file

Peak-picked mass spectrometer output file in mzML format

*.{mzML}

versions_openms

${task.process}

:string

The name of the process

openms

:string

The name of the tool

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

openms

:string

The name of the tool

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'

:eval

The expression to obtain the version of the tool

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses