Description

Refreshes the protein references for all peptide hits.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

id_file:file

idXML identification file

*.{idXML}

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

id_fasta:file

Input sequence database in FASTA format

*.fasta

Output

name:type
description
pattern

id_file_pi

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.idXML:file

Refreshed idXML identification file

*.{idXML}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses