Description

Refreshes the protein references for all peptide hits.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

idxml{:bash}

:file

idXML identification file

*.idXML

fasta{:bash}

:file

Input sequence database in FASTA format

*.fasta

Output

name:type
description
pattern

indexed_idxml{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

*.idXML{:bash}

:file

Refreshed idXML identification file

*.idXML

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses