Description

Refreshes the protein references for all peptide hits.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

id_file (file)

idXML identification file

*.{idXML}

id_fasta (file)

Input sequence database in FASTA format

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

versions (file)

File containing software versions

versions.yml

id_file_pi (file)

Refreshed idXML identification file

*.{idXML}

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses