Description

Refreshes the protein references for all peptide hits.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

id_file (file)

idXML identification file

*.{idXML}

id_fasta (file)

Input sequence database in FASTA format

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

versions (file)

File containing software versions

versions.yml

id_file_pi (file)

Refreshed idXML identification file

*.{idXML}
maintainer
Github user jonasscheid
get in touch
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Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses

openms.de openms.readthedocs.io/en/latest https://github.com/OpenMS/OpenMS 10.1038/s41592-024-02197-7