Refreshes the protein references for all peptide hits.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
idxml{:bash}
:file
idXML identification file
*.idXML
fasta{:bash}
Input sequence database in FASTA format
*.fasta
indexed_idxml{:bash}
*.idXML{:bash}
Refreshed idXML identification file
versions_openms{:bash}
${task.process}{:bash}
:string
The name of the process
openms{:bash}
The name of the tool
FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
OpenMS is an open-source software C++ library for LC-MS data management and analyses
