Description

Perform HLA-I typing of sequencing data

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

bam (file)

BAM file

*.{bam}

bai (file)

BAM index file

*.{bai}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', seq_type:'DNA' ]

versions (file)

File containing software versions

versions.yml

output (file)

OptiType Results Folder

${prefix}

pdf (file)

OptiType PDF Plots

*.pdf

Tools

optitype
BSD-3-Clause

Precision HLA typing from next-generation sequencing data