Perform HLA-I typing of sequencing data
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
BAM file
*.{bam}
bai:file
BAM index file
*.{bai}
hla_type
Groovy Map containing sample information e.g. [ id:‘test’, seq_type:‘DNA’ ]
${prefix}/*.tsv:file
HLA type
${prefix}/*.tsv
coverage_plot
${prefix}/*.pdf:file
OptiType coverage plot
${prefix}/*.pdf
versions
versions.yml:file
File containing software versions
versions.yml
Precision HLA typing from next-generation sequencing data
