Perform HLA-I typing of sequencing data
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
BAM file
*.{bam}
bai
BAM index file
*.{bai}
Groovy Map containing sample information e.g. [ id:‘test’, seq_type:‘DNA’ ]
versions
File containing software versions
versions.yml
hla_type
HLA type
${prefix}/*.tsv
coverage_plot
OptiType coverage plot
${prefix}/*.pdf
Precision HLA typing from next-generation sequencing data
