A program to convert bam into paf.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
An input bam file to be converted into paf.
paf{:bash}
versions_samtools{:bash}
${task.process}{:bash}
:string
Name of the process
samtools{:bash}
Name of the tool
samtools version | sed '1!d;s/.* //'{:bash}
:eval
The expression to obtain the version of the tool
versions_paftools{:bash}
paftools{:bash}
paftools.js version{:bash}
versions{:bash}
A program to manipulate paf files / convert to and from paf.
