Description

A program to convert bam into paf.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

An input bam file to be converted into paf.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

paf (file)

An output paf containing detailed data about the sample

${prefix}.paf

versions (file)

File containing software versions

versions.yml

Tools

paftools
MIT

A program to manipulate paf files / convert to and from paf.