Description

A program to convert bam into paf.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bam{:bash}

:file

An input bam file to be converted into paf.

Output

name:type
description
pattern

paf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

paftools
MIT

A program to manipulate paf files / convert to and from paf.