modules/pairix

a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates

indexblock-compressedpairs

https://github.com/nf-core/modules/[...]/modules/nf-core/pairix

Description

a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`pair{:bash}`
`:file`

pair file

Output

name:type

description

pattern

`index{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`pair{:bash}`
`:file`

pair index file

*.px2

`*.px2{:bash}`
`:file`

pair index file

*.px2

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

pairix
MIT

2D indexing on bgzipped text files of paired genomic coordinates

github.com/4dn-dcic/pairix

modules/pairix

Description

Input

`meta{:bash}`
`:map`

`pair{:bash}`
`:file`

Output

`index{:bash}`

`meta{:bash}`
`:map`

`pair{:bash}`
`:file`

`*.px2{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

pairix
MIT

included in

maintainer

get in touch

modules/pairix

Description

Input

meta{:bash}:map

pair{:bash}:file

Output

index{:bash}

meta{:bash}:map

pair{:bash}:file

*.px2{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

pairix MIT

included in

maintainer

get in touch

`meta{:bash}`
`:map`

`pair{:bash}`
`:file`

`index{:bash}`

`meta{:bash}`
`:map`

`pair{:bash}`
`:file`

`*.px2{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

pairix
MIT