Description

a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

pair (file)

pair file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

index (file)

pair index file

*.px2
included in
hicar
maintainer
Github user jianhong
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

pairix
MIT

2D indexing on bgzipped text files of paired genomic coordinates

github.com/4dn-dcic/pairix