Description

a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

pair:file

pair file

Output

name:type
description
pattern

index

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

pair:file

pair index file

*.px2

*.px2:file

pair index file

*.px2

versions

versions.yml:file

File containing software versions

versions.yml

Tools

pairix
MIT

2D indexing on bgzipped text files of paired genomic coordinates

github.com/4dn-dcic/pairix
included in
hicar
maintainer
Github user jianhong
get in touch
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