Description

Find and remove PCR/optical duplicates

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

input (file)

pair file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

pairs (file)

Duplicates removed pairs

*.{pairs.gz}

stat (file)

stats of the pairs

*.{pairs.stat}
included in
hicar
maintainer
Github user jianhong
get in touch
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Tools

pairtools
MIT

CLI tools to process mapped Hi-C data

http://pairtools.readthedocs.io https://github.com/mirnylab/pairtools