Find and remove PCR/optical duplicates
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input{:bash}
:file
pair file
pairs{:bash}
*.pairs.gz{:bash}
Duplicates removed pairs
*.{pairs.gz}
stat{:bash}
*.pairs.stat{:bash}
stats of the pairs
*.{pairs.stat}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
CLI tools to process mapped Hi-C data
