Description

Flip pairs to get an upper-triangular matrix

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

sam (file)

pair file

chromsizes (file)

chromosome size file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

flip (file)

output file of flip

*.{flip.gz}

Tools

pairtools
MIT

CLI tools to process mapped Hi-C data