Assign restriction fragments to pairs
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
pairs{:bash}
:file
pairs file
frag{:bash}
a tab-separated BED file with the positions of restriction fragments (chrom, start, end). Can be generated using cooler digest.
restrict{:bash}
*.pairs.gz{:bash}
Filtered pairs file
*.{pairs.gz}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
CLI tools to process mapped Hi-C data
