Description

Assign restriction fragments to pairs

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

pairs:file

pairs file

frag:file

a tab-separated BED file with the positions of restriction fragments (chrom, start, end). Can be generated using cooler digest.

Output

name:type
description
pattern

restrict

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.pairs.gz:file

Filtered pairs file

*.{pairs.gz}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

pairtools
MIT

CLI tools to process mapped Hi-C data