Assign restriction fragments to pairs
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
pairs
:file
pairs file
frag
a tab-separated BED file with the positions of restriction fragments (chrom, start, end). Can be generated using cooler digest.
restrict
*.pairs.gz
Filtered pairs file
*.{pairs.gz}
versions_pairtools
${task.process}
:string
The name of the process
pairtools
The name of the tool
pairtools --version | sed 's/.*pairtools.*version //'
:eval
The expression to obtain the version of the tool
versions
CLI tools to process mapped Hi-C data
