Description

Sort a .pairs/.pairsam file

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input

:file

A pairs file

Output

name:type
description
pattern

sorted

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.pairs.gz

:file

Sorted pairs file

*.{pairs.gz}

versions_pairtools

${task.process}

:string

The name of the process

pairtools

:string

The name of the tool

pairtools --version | sed 's/.*pairtools.*version //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

pairtools

:string

The name of the tool

pairtools --version | sed 's/.*pairtools.*version //'

:eval

The expression to obtain the version of the tool

Tools

pairtools
MIT

CLI tools to process mapped Hi-C data