modules/pairtools_sort

Sort a .pairs/.pairsam file

sortpairspairsam

https://github.com/nf-core/modules/[...]/modules/nf-core/pairtools/sort

Description

Sort a .pairs/.pairsam file

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`input:file`

A pairs file

Output

name:type

description

pattern

`sorted`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.pairs.gz:file`

Sorted pairs file

*.{pairs.gz}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

pairtools
MIT

CLI tools to process mapped Hi-C data

http://pairtools.readthedocs.io https://github.com/mirnylab/pairtools